SCMP913

Whole-genome association analysis with PLINK
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Courses tagged with "SCMP913"

Learn how to perform data cleaning and statistical analysis of large scale genetic data using PLINK and R software. We will use SciNet to run the PLINK analytical workflow to perform markers and individuals quality control, including population stratification and ancestry followed by association analysis between genetic variation and trait of interest. R-software (basic R plotting and ggplot package) will be use to visualize the results.
Teacher: Camh Team
Start date: 18 Aug 2020
End date: 20 Aug 2020
This 3 hours course will focus of data cleaning and statistical analysis of large scale genetic data using PLINK and R softwares. We will use SciNet to run the PLINK analytical workflow to perform markers and individuals quality control, including population stratification and ancestry followed by association analysis between genetic variation and trait of interest. R-software (basic R plotting and ggplot package) will be use to visualize the results. -- Prerequisite: basic Linux command line skills and R
Teacher: SciNet Team
Date: Mon, 24 Jun 2019 - 1:30 pm
This 3 hours course will focus of data cleaning and statistical analysis of large scale genetic data using PLINK and R softwares. We will use SciNet to run the PLINK analytical workflow to perform markers and individuals quality control, including population stratification and ancestry followed by association analysis between genetic variation and trait of interest. R-software (basic R plotting and ggplot package) will be use to visualize the results.
Teacher: Camh Team
Date: Wed, 13 Jun 2018 - 9:30 am
Part of the 2017 Ontario Summer School.
Teacher: SciNet Team
Date: Mon, 24 Jul 2017 - 9:30 am