Course: BCH2203 Introduction to Programming in Python (Winter 2022)

Calendar

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Topic outline

General

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- BCH2203 Introduction to Programming in Python (Winter 2022)
  In this course students will be instructed in how to program in Python. Ultimately students will learn how to use Python to analyze, process and visualize data. This course is designed for students with little to no experience in programming.
  This is a graduate course that can be taken for by UofT Biochemistry graduate students. Those students should enrol using ACORN/ROSI.
  Teacher: Ramses van Zon
  Start date: 12 Jan 2022
  End date: 15 Apr 2023
  Scientific Computing Credits: 9
  Data Science Credits: 9
  : 1
- Page
  
  Syllabus Page
- Forum
  
  Forum for questions regarding the course material
- Forum
  
  Announcements Forum
Lectures Slides
- File
  
  Lecture 1: Intro File
- File
  
  Lecture 2: Lists and I/O in Python File
- File
  
  Lecture 3: Dictionaries, functions, modules... File
- File
  
  Lecture 4: Arrays File
- File
  
  Lecture 5: Regular expressions and dataframes File
- File
  
  Lecture 6: Review and Visualization with Matplotlib File
- File
  
  Lecture 7: Biopython File
- File
  
  Lecture 8: Sequence Alignment with BLAST and BioPython File
- File
  
  Lecture 9: Performance File
- File
  
  Lecture 10: Machine Learning File
- File
  
  Lecture 11: Randomness File
- File
  
  Lecture 12: Structure File
Recordings
- File
  
  Lecture 1: About the course and Python File
- File
  
  Lecture 2: Lists and I/O in Python File
- File
  
  Lecture 3: Dictionaries, functions and modules File
- File
  
  Lecture 4 Recording (lists. strings, numpy) missing. File
  
  54.6 MB Video file (MP4) Uploaded 2/02/22, 13:29
  
  Due to technical difficulties, recording of the lecture on Feb 2, 2022 failed. What's posted here is a very similar lecture from 2020. Please consider the pdf slides above as the definite reference of what was covered in the Feb 2 lecture.
- File
  
  Lecture 5: Dataframes and regular expressions File
- File
  
  Lecture 6: Review and Matplotlib Visualization File
- File
  
  Lecture 7: Biopython File
- File
  
  Lecture 8: Sequence Alignment with BLAST and BioPython File
- File
  
  Lecture 9: Performance File
- File
  
  Lecture 10: Machine Learning File
- File
  
  Lecture 11: Randomness and stats File
- File
  
  Lecture 12: Protein Structures File
Assignments
- Assignment
  
  1. Survey Analysis Assignment
  
  Opened: Wednesday, 19 January 2022, 12:00 AM
  
  Due: Wednesday, 26 January 2022, 11:59 PM
- Assignment
  
  2. Survey Analysis Improved Assignment
  
  Opened: Wednesday, 2 February 2022, 1:30 PM
  
  Due: Wednesday, 9 February 2022, 11:59 PM
- Assignment
  
  3: Pandas and zombies Assignment
  
  Opened: Wednesday, 16 February 2022, 12:00 AM
  
  Due: Wednesday, 2 March 2022, 11:59 PM
- Assignment
  
  4. Rotten eggs Assignment
  
  Opened: Thursday, 10 March 2022, 12:00 AM
  
  Due: Thursday, 17 March 2022, 11:59 PM
- Assignment
  
  5. Seeds classification Assignment
  
  Opened: Wednesday, 23 March 2022, 12:59 AM
  
  Due: Wednesday, 30 March 2022, 11:59 PM
- Assignment
  
  6. Classify downloaded protein structures Assignment
  
  Opened: Sunday, 10 April 2022, 12:00 AM
  
  Due: Sunday, 17 April 2022, 11:59 PM
Additional material
- File
  
  dna.fasta - DNA sequence used in the example in lecture 8 (alignment) File

December 2022

Topic outline

General

BCH2203 Introduction to Programming in Python (Winter 2022)

Lectures Slides

Recordings

Assignments

Additional material