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• Select section General

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  General

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  • Select activity Course Description

    BCH2203 Introduction to Programming in Python (Winter 2022)

    In this course students will be instructed in how to program in Python. Ultimately students will learn how to use Python to analyze, process and visualize data. This course is designed for students with little to no experience in programming. 

    This is a graduate course that can be taken for by UofT Biochemistry graduate students. Those students should enrol using ACORN/ROSI.
    

    Teacher: Ramses van Zon

    Start date: 12 Jan. 2022

    End date: 15 Apr. 2023

    Scientific Computing Credits: 9

    Data Science Credits: 9

    Events:

    Intro to Programming - Lecture 1 - Wednesday, 12 January, 11:00 AM » 12:00 PM

    BCH2203 Office hours (online) - Monday, 17 January, 2:00 PM » 3:00 PM

    Intro to Programming - Lecture - Wednesday, 19 January, 11:00 AM » 12:00 PM

    A full list of course events can be found here.
  • Select activity Syllabus

    

    Syllabus Page
  • Select activity Forum for questions regarding the course material

    

    Forum for questions regarding the course material
  • Select activity Announcements

    

    Announcements Forum
• Select section Lectures Slides

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  Lectures Slides

  • Select activity Lecture 1: Intro

    

    Lecture 1: Intro File
  • Select activity Lecture 2: Lists and I/O in Python

    

    Lecture 2: Lists and I/O in Python File
  • Select activity Lecture 3: Dictionaries, functions, modules...

    

    Lecture 3: Dictionaries, functions, modules... File
  • Select activity Lecture 4: Arrays

    

    Lecture 4: Arrays File
  • Select activity Lecture 5: Regular expressions and dataframes

    

    Lecture 5: Regular expressions and dataframes File
  • Select activity Lecture 6: Review and Visualization with Matplotlib

    

    Lecture 6: Review and Visualization with Matplotlib File
  • Select activity Lecture 7: Biopython

    

    Lecture 7: Biopython File
  • Select activity Lecture 8: Sequence Alignment with BLAST and BioPython

    

    Lecture 8: Sequence Alignment with BLAST and BioPython File
  • Select activity Lecture 9: Performance

    

    Lecture 9: Performance File
  • Select activity Lecture 10: Machine Learning

    

    Lecture 10: Machine Learning File
  • Select activity Lecture 11: Randomness

    

    Lecture 11: Randomness File
  • Select activity Lecture 12: Structure

    

    Lecture 12: Structure File
• Select section Recordings

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  Recordings

  • Select activity Lecture 1: About the course and Python

    

    Lecture 1: About the course and Python File
  • Select activity Lecture 2: Lists and I/O in Python

    

    Lecture 2: Lists and I/O in Python File
  • Select activity Lecture 3: Dictionaries, functions and modules

    

    Lecture 3: Dictionaries, functions and modules File
  • Select activity Lecture 4 Recording (lists. strings, numpy) missing.

    

    Lecture 4 Recording (lists. strings, numpy) missing. File MP4

    Due to technical difficulties, recording of the lecture on Feb 2, 2022 failed.  What's posted here is a very similar lecture from 2020.  Please consider the pdf slides above as the definite reference of what was covered in the Feb 2 lecture.

    54.6 MB · Uploaded 2/02/22, 13:29
  • Select activity Lecture 5: Dataframes and regular expressions

    

    Lecture 5: Dataframes and regular expressions File
  • Select activity Lecture 6: Review and Matplotlib Visualization

    

    Lecture 6: Review and Matplotlib Visualization File
  • Select activity Lecture 7: Biopython

    

    Lecture 7: Biopython File
  • Select activity Lecture 8: Sequence Alignment with BLAST and BioPython

    

    Lecture 8: Sequence Alignment with BLAST and BioPython File
  • Select activity Lecture 9: Performance

    

    Lecture 9: Performance File
  • Select activity Lecture 10: Machine Learning

    

    Lecture 10: Machine Learning File
  • Select activity Lecture 11: Randomness and stats

    

    Lecture 11: Randomness and stats File
  • Select activity Lecture 12: Protein Structures

    

    Lecture 12: Protein Structures File
• Select section Assignments

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  Assignments

  • Select activity 1. Survey Analysis

    

    1. Survey Analysis Assignment

    Opened: Wednesday, 19 January 2022, 12:00 AM

    Due: Wednesday, 26 January 2022, 11:59 PM
  • Select activity 2. Survey Analysis Improved

    

    2. Survey Analysis Improved Assignment

    Opened: Wednesday, 2 February 2022, 1:30 PM

    Due: Wednesday, 9 February 2022, 11:59 PM
  • Select activity 3: Pandas and zombies

    

    3: Pandas and zombies Assignment

    Opened: Wednesday, 16 February 2022, 12:00 AM

    Due: Wednesday, 2 March 2022, 11:59 PM
  • Select activity 4. Rotten eggs

    

    4. Rotten eggs Assignment

    Opened: Thursday, 10 March 2022, 12:00 AM

    Due: Thursday, 17 March 2022, 11:59 PM
  • Select activity 5. Seeds classification

    

    5. Seeds classification Assignment

    Opened: Wednesday, 23 March 2022, 12:59 AM

    Due: Wednesday, 30 March 2022, 11:59 PM
  • Select activity 6. Classify downloaded protein structures

    

    6. Classify downloaded protein structures Assignment

    Opened: Sunday, 10 April 2022, 12:00 AM

    Due: Sunday, 17 April 2022, 11:59 PM
• Select section Additional material

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  Additional material

  • Select activity dna.fasta - DNA sequence used in the example in lecture 8 (alignment)

    

    dna.fasta - DNA sequence used in the example in lecture 8 (alignment) File